Spatial & Functional
Genomics Affinity Group

SFG Publications

Public resources aid diabetes gene discovery.

D.L. Cousminer and S.F.A. Grant

Nature Genetics Epub ahead of print, October 2018.

PMID: Link

First Genome Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.

D.L. Cousminer*, E. Ahlqvist*, R. Mishra*, M.K. Andersen*, A. Chesi, M.I. Hawa, A. Davis, K.M. Hodge, J.P. Bradfield, K. Zhou, V.C. Guy, M. Åkerlund, M. Wod, L.G. Fritsche, H. Vestergaard, J. Snyder, K. Højlund, A. Linneberg, A. Käräjämäki, I. Brandslund, C.E. Kim, D. Witte, E. Pettersen Sørgjerd, D.J. Brillon, O. Pedersen, H. Beck-Nielsen, N. Grarup, R.E. Pratley, M.R. Rickels, A. Vella, F. Ovalle, O. Melander, R.I. Harris, S. Varvel, V.E.R. Grill, Bone Mineral Density in Childhood Study, H. Hakonarson, P. Froguel, J.T. Lonsdale, D. Mauricio, N.C. Schloot, K. Khunti, C.J. Greenbaum, B.O. Åsvold, K.B. Yderstræde, E.R. Pearson, S. Schwartz, B.F. Voight, T. Hansen, T. Tuomi, B.O. Boehm*, L. Groop*, R.D. Leslie* and S.F.A. Grant*

Diabetes Care Epub ahead of print, September 2018 Notes: *equal contribution.

PMID: Link

Leveraging epigenomics and contactomics data to investigate SNP pairs in GWAS

Elisabetta Manduchi, Scott M. Williams, Alessandra Chesi, Matthew E. Johnson, Andrew D. Wells, Struan F.A. Grant, Jason H. Moore
Hum Genet. 2018 May; 137(5): 413–425. Published online 2018 May 24. doi: 10.1007/s00439-018-1893-0

PMID: 29797095

Leveraging Putative Enhancer-Promoter Interactions to Investigate Two-Way Epistasis in Type 2 Diabetes GWAS

Manduchi E, Chesi A, Hall MA, Grant SFA, Moore JH.
Pac Symp Biocomput. 2018;23:548-558.

PMID: 29218913

The Loss of TET2 Promotes CD8+ T Cell Memory Differentiation

Carty SA, Gohil M, Banks LB, Cotton RM, Johnson ME, Stelekati E, Wells AD, Wherry EJ, Koretzky GA, Jordan MS.
J Immunol. 2018 Jan 1;200(1):82-91.

PMID: 29150566

Antagonism of B Cell Enhancer Networks by STAT5 Drives Leukemia and Poor Patient Survival

Katerndahl CDS, Heltemes-Harris LM, Willette MJL, Henzler CM, Frietze S, Yang R, Schjerven H, Silverstein KAT, Ramsey LB, Hubbard G, Wells AD, Kuiper RP, Scheijen B, van Leeuwen FN, M¸schen M, Kornblau SM, Farrar MA.
Nat Immunol. 2017 Jun;18(6):694-704.

PMID: 28369050

Ndfip1 Restricts mTORC1 Signaling and Glycolysis in Regulatory T Cells to Prevent Autoinflammatory Disease

Layman AAK, Deng G, O'Leary CE, Tadros S, Thomas RM, Dybas JM, Moser EK, Wells AD, Doliba NM, Oliver PM. 

Nat Commun. 2017 Jun 5;8:15677.

PMID: 28580955

A Dementia-Associated Risk Variant near TMEM106B Alters Chromatin Architecture and Gene Expression

Gallagher MD, Posavi M, Huang P, Unger TL, Berlyand Y, Gruenewald AL, Chesi A, Manduchi E, Wells AD, Grant SFA, Blobel GA, Brown CD, Chen-Plotkin AS.
Am J Hum Genet. 2017 Nov 2;101(5):643-663.

PMID: 29056226

Implicating Candidate Genes at GWAS Signals by Leveraging Topologically Associating Domains

Way GP, Youngstrom DW, Hankenson KD, Greene CS, Grant SF.
Eur J Hum Genet. 2017 Nov;25(11):1286-1289.

PMID: 28792001

Foxp3 and Toll-Like Receptor Signaling Balance Treg Cell Anabolic Metabolism for Suppression

Gerriets VA, Kishton RJ, Johnson MO, Cohen S, Siska PJ, Nichols AG, Warmoes MO, de Cubas AA, MacIver NJ, Locasale JW, Turka LA, Wells AD, Rathmell JC.

Nat Immunol. 2016 Dec;17(12):1459-1466.

PMID: 27695003

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